Waxholm Space Atlas of the C57BL/6J Mouse Brain

Here you can download image volumes representing the canonical Waxholm Space (WHS) adult C57BL/6J mouse brain. These images include T1-, T2*-, and T2-Weighted MR volumes (generated at the Duke Center for In-Vivo Microscopy), Nissl-stained optical histology (acquired at Drexel University), and a volume of labels. All volumes are represented at 21.5μ isotropic resolution.

The label volume represents phase one delineations of the WHS mouse brain. The atlas contains 26 structures (+ inner ear) organized in accordance with the NeuroLex Brain Partonomy scheme found at: http://neurolex.org/wiki/Brain_Partonomy... The delineations are intended as a communication aid for finding brain locations. Delineations are based on visually distinguishable features and are not intended to impose a specific view of brain structure or function.

The Community Site for Waxholm Space (http://waxholm.incf.org) contains information for end users and developers wishing wishing to register or share their data.
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Specifications

License:Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
Domain:Microscopy

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incfwhsmouse: Labeled Atlas 0.5.1 release

WHS_atlas_v0.5.1.zip posted by Mathew Abrams on Dec 20, 2016

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incfwhsmouse: Best Practices (MRI) release

BestPractices_MRI.pdf posted by Mathew Abrams on Dec 19, 2016

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incfwhsmouse: Best Practices (Histology) release

BestPractices_Histology.pdf posted by Mathew Abrams on Dec 19, 2016

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incfwhsmouse: MBAT-ready Labeled Atlas v0.6.2 release

MBAT_WHS_atlas_v0.6.2.zip posted by Mathew Abrams on Dec 19, 2016

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incfwhsmouse:  T2-Weighted Atlas  release

canon_T2W_r.nii.gz posted by Mathew Abrams on Dec 19, 2016

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incfwhsmouse: T2*-Weighted Atlas  release

canon_T2star_r.nii.gz posted by Mathew Abrams on Dec 19, 2016

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incfwhsmouse: T1-Weighted Atlas release

canon_T1_r.nii.gz posted by Mathew Abrams on Dec 19, 2016