Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC Stage. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC Stage.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1NITRC Image Repository99.21%
  2MRIcron97.64%
  3BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  4ITK-SNAP93.79%
  51000 Functional Connectomes Project93.65%
  6CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  7MRIcroGL91.70%
  8Rosetta Bit90.88%
  9Functional Mixed Processes Models89.05%
  10MPScope88.22%
  11Multi-Modal MRI Reproducibility Resource88.21%
  12DTI-TK87.44%
  13TOADS-CRUISE Brain Segmentation Tools86.83%
  14BrainNet Viewer85.88%
  15Hadoop for data colocation85.39%
  16JIST: Java Image Science Toolkit85.19%
  17Kurtosis Imaging Network - KIN84.52%
  18PANDA: a pipeline tool for diffusion MRI84.44%
  19BRAINSTestData84.43%
  20CONN : functional connectivity toolbox84.37%
  21ITools Resourceome84.16%
  22Local Label Learning (LLL) Segmentation83.13%
  23HD Neuro-Informatics83.02%
  24Functional Imaging BIRN82.80%
  25Infant Macaque MRI And DTI Templates82.26%
  26Lumina LP- 400 Response System82.21%
  27Philips Users Community82.17%
  28fMRI Results Comparison Library82.15%
  29Statistical Methods for Heterogeneous Neuroimaging Data81.82%
  30HERMES81.06%
  31NUTMEG80.78%
  32ODIN80.52%
  33Stochastic Tractography System80.43%
  34Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  35fMRIstat79.79%
  36map3d79.67%
  37Turbo-BrainVoyager79.64%
  38NeuroDebian79.34%
  39University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  40EEGLAB78.77%
  41Vaa3D and Vaa3D-Neuron78.76%
  42Seg3D78.68%
  43Ogles - OpenGL/OIV Stereotactic Tool78.64%
  44UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  45Umeå Brain Arteries78.64%
  46iView X MRI-LR - Eye Tracking for fMRI78.64%
  47MITK Diffusion78.55%
  48Solar Eclipse Imaging Genetics tools78.54%
  49L-Neuron78.49%
  50XCEDE Schema78.35%
  51BioSig78.08%
  523T DWI test-retest reliability dataset78.00%
  53Curry 777.81%
  54GazeReader77.81%
  55Functional ROI Atlas77.78%
  56BluePyOpt77.70%
  57SurfStat77.60%
  58CBRAIN77.49%
  59GPU based affine registration77.46%
  60DSI Studio77.44%
  61FieldTrip77.34%
  62Biomag Discussion Group on Yahoo77.32%
  63XNBC77.14%
  64WFU_PickAtlas77.14%
  65Brede Toolbox77.01%
  66EEG Toolbox76.93%
  67HCP Harvard/MGH-UCLA76.85%
  68EEProbe76.84%
  69MASIMatlab76.81%
  70epi-example-dicom76.63%
  71E-Prime Extensions for fMRI76.62%
  72National Database for Autism Research76.52%
  73TurtleSeg76.48%
  74MindSeer76.42%
  75COINS76.26%
  76EONS76.25%
  77Insight Toolkit76.17%
  78Spatial Analysis 3D76.15%
  79ASA - Advanced Source Analysis76.11%
  80NIPY Diffusion Imaging Analysis76.10%
  81Brain Products' EEG/fMRI Hardware76.05%
  82PING75.85%
  83Cytoseg75.83%
  84HCP WU-Minn Consortium75.77%
  85In vivo MEMRI-based Rat Brain Atlas75.71%
  86NICE-SIGN75.68%
  87MNI Macaque Atlases75.65%
  88GesTr75.60%
  89cmrep75.59%
  90ParaView75.52%
  91Surf Ice75.48%
  92PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  93Framework for Open Programmatic Access75.38%
  94LIBEEP75.38%
  95NIPY File IO75.18%
  96Micro-Manager75.17%
  97A robust method for correcting partial volume effect in ASL data75.12%
  98GIFTI75.05%
  99NFT: Neuroelectromag Forward Modeling75.04%
  100Brainsight74.90%
  101Faceted Search Based Ontology Visualizer74.89%
  102INCF Neuroimaging Data Sharing74.89%
  103Net Station74.81%
  104UCLA Multimodal Connectivity Database74.77%
  105FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  106brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  107EEGVIS74.66%
  108ProbabilisticBiasCorrection74.60%
  109I/OWA 374.57%
  110dtiBrainScope74.54%
  111DICOM_UploadGUI74.52%
  112Connectome File Format (CFF)74.48%
  113APERTURE74.44%
  114mask_explorer74.44%
  115Bisque74.41%
  116BrainLiner.jp74.34%
  117Advanced Normalization Tools74.32%
  118nitime74.27%
  119INVIZIAN74.26%
  120Anatomist74.21%
  121NordicNeuroLab74.14%
  122XCEDE Schema74.09%
  123Presentation74.05%
  124connectir74.03%
  125NC-IGT Fast Imaging Library74.00%
  126Age Related Atrophy Dataset74.00%
  127ERPLAB73.92%
  128VIEWPixx73.91%
  129CANDI Share: Schizophrenia Bulletin 200873.91%
  130Triangle BioSystems73.89%
  131BrainMaps.org73.86%
  132Pydicom73.82%
  133The fMRI Data Center73.82%
  134PySurfer73.76%
  135Statistics Online Computational Resource73.45%
  136TARQUIN MRS analysis package73.40%
  137NIRx NIRS Neuroimaging73.39%
  138PyNIfTI73.36%
  139Neuroimaging Made Easy Blog73.33%
  140COGNISION (TM) System73.25%
  141OpenElectrophy73.22%
  142NIPY Community73.20%
  143XNAT Extras73.04%
  144MINC - Medical Image NetCDF73.02%
  145NITRC Community73.02%
  146NeuroScope72.95%
  147ASL data processing tool box72.94%
  148MagPro Magnetic Stimulator (TMS)72.94%
  149Lipsia72.87%
  150MedINRIA72.87%
  151fMRI-CPCA72.85%
  152Mouse Connectome Project (MCP)72.79%
  153Fiber Tracking Tool72.78%
  154Fiber-tracking based on Finsler distance72.78%
  155SumsDB Database72.73%
  156Fiber Optic Button Response System72.72%
  157CUDA accelerated spherical model M/EEG72.66%
  158False Discovery Rate Weighted72.64%
  159DATAPixx72.63%
  160OpenFMRI72.62%
  161DONE: Detection of Outlier NEurons72.55%
  162ArtRepair for robust fMRI72.45%
  163WhiteText - annotated neuroscience text72.44%
  164Generalized PPI Toolbox72.38%
  165NIPY Structural and Functional Analysis72.36%
  166MONSTR Multi Contrast Brain Stripping72.30%
  167CLEAVE: Large Data Set ANOVA72.21%
  168scikit-learn72.17%
  169Mag Design and Engineering72.10%
  170Working Memory Trainer72.06%
  171PPMI72.00%
  172SFMProject71.92%
  173vuTools71.88%
  174Hitachi Optical Topography System71.88%
  175BRAINSConstellationDetector71.85%
  176Computational Morphometry Toolkit (CMTK)71.61%
  177MRI Digital Projection System71.59%
  178ShapeViewer71.52%
  179Normative Independent Component Analysis71.48%
  180LDDMM71.43%
  181fNIR Devices71.38%
  182OpenMEEG71.38%
  183TORTOISE71.25%
  184NeuroElf71.23%
  185ADNI71.16%
  1864D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  187COST71.02%
  188GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.85%
  189NeuroSynth70.83%
  190Viking Viewer for Connectomics70.74%
  191Network-Based Statistic (NBS)70.72%
  192SR Research EyeLink Eye Trackers70.67%
  193LONI Provenance Editor70.63%
  194CoCoMac Brain Connectivity Database70.62%
  195MazeSuite70.54%
  196NCANDA: Data Integration Component70.52%
  197BrainBrowser70.49%
  198Pipeline Neuroimaging VirtualEnvironment70.41%
  199Biomedical Informatics Research Network70.34%
  200Disease State Prediction70.12%
  201Open Connectome Project70.04%
  202REST: a toolkit for resting-state fMRI69.97%
  203OEI fMRI compatible olfactometer69.96%
  204Journals69.76%
  205Fast Fourier Transform (FFT) JavaLibrary69.75%
  206Laboratory of Neuro Imaging (LONI)69.74%
  207dcm2nii69.74%
  208IMOD - 3D Reconstruction and Analysis69.72%
  209Mouse BIRN69.44%
  210BrainGraph Editor 1.0 Beta69.44%
  211Waxholm Space Atlas of the Sprague Dawley Rat Brain69.42%
  212Source Information Flow Toolbox69.38%
  213LIMO EEG69.17%
  214Center for Computational Biology (CCB)69.15%
  215FADTTSter68.99%
  216Synchronized Histological Image View Arc68.86%
  217cbiNifti: Matlab/Octave Nifti library68.82%
  218BrainMap Database68.82%
  219Analyze68.78%
  220DPARSF68.68%
  221Textpresso - literature search engine68.67%
  222BioImage Suite68.66%
  223NeuroshareLibrary68.65%
  224BrainVisa Morphologist extensions68.62%
  225E-Prime 3.068.58%
  226PST MRI Simulator68.50%
  227Data Format Tools68.30%
  228Augmented Reality Mirror68.28%
  229PsychoPy68.14%
  230CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  231Grantees Meeting for NITRC68.08%
  232Create DWI Atlas67.98%
  233The Neuro Bureau67.72%
  234BrainMagix SPM Viewer67.70%
  235BioMesh3D67.70%
  236NeuroWeb - NeuroImaging Database67.63%
  237NeuriteTracer67.45%
  238MultiTracer version 267.40%
  239dinifti67.32%
  240Rodent Cortical Thickness Analysis67.26%
  241Low Resolution Brain Electromagnetic Tomography67.25%
  242BrainVISA67.24%
  243N2A67.19%
  244MeshGen - Surface meshes from volumetric segmentation data67.11%
  245Brede Wiki67.00%
  246SCIRun66.94%
  247Rockland Download Link Script66.78%
  248MEGSIM66.69%
  249Nilearn66.66%
  250VANDPIRE66.50%
  251NIPY Pipeline and Interfaces66.47%
  252CAMINO-TRACKVIS66.47%
  253HDBIG66.40%
  254SLIC: a whole brain parcellation toolbox66.20%
  255ImageVis3D66.18%
  256Multiscale Weighted Principal Component Regression66.06%
  257Homer266.00%
  258BrainMask Volume Processing Tool65.98%
  259Books65.58%
  260Group Level Imputation of Statistic Maps65.49%
  261Connectome Viewer65.38%
  262SCRalyze65.38%
  263ShapeTools65.31%
  264HFH_DTI_DATA65.15%
  265MRBrainS Evaluation Framework / Challenge65.15%
  266PICASSO skull stripping tool65.14%
  267CBICA: Cancer and Phenomics Toolkit (CapTk)65.11%
  268ExPosition Packages65.09%
  269MRI_CVPR65.08%
  270Signed Differential Mapping65.05%
  271NIREP64.96%
  272Parkinson's Disease Discovery Database64.60%
  2733D Slicer64.41%
  274Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  275Mango64.12%
  276Diffusion Warp64.08%
  277IIT Human Brain Atlas (v.4.1)64.08%
  278UNC-Wisconsin Neurodevelopment Rhesus MRI Database63.93%
  279UNC 0-1-2 Infant Atlases63.79%
  280Non-rigid groupwise registration method63.75%
  281MRtrix63.60%
  282Web Interfaces for Multiscale Images63.57%
  283MarsBaR region of interest toolbox63.54%
  284Hammer And WML Modules for 3D Slicer63.32%
  285Temporal-lobe.com63.32%
  286NeoSegPipeline63.20%
  287Brain Entropy in space and time (BEst)63.14%
  288FSL extensions63.14%
  289POS2SPM63.12%
  290Medical Image Visualization and Analysis63.06%
  291AFNI63.05%
  292CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  293ENIGMA-DTI pipeline62.94%
  294Spatially Constrained Parcellation62.81%
  295Talairach Daemon62.69%
  296Neuroimaging Data Access Group62.68%
  297Diffusion Toolkit / TrackVis62.66%
  298The Cognitive Atlas62.43%
  299Tractography based on Riemannian geodesics and tensor adjugates62.21%
  300fNIRS Data Analysis Environment61.94%
  301Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  302Mindboggle-101 manually labeled brains61.81%
  303NeuroImaging Analysis Kit (NIAK)61.75%
  304Monte Carlo Simulation Software: tMCimg61.67%
  305Neural ElectroMagnetic Ontologies61.65%
  306PubBrain Database61.64%
  307MoTrak - Head Motion Tracking System61.63%
  308Automatic Registration Toolbox61.15%
  309CIGAL61.11%
  310SPM for fNIRS toolbox61.04%
  311Mesh-based Monte Carlo (MMC)60.92%
  312MRI denoising60.63%
  313BrainVoyager60.48%
  314Neuroinformatics - The Journal60.36%
  315Monte Carlo eXtreme (MCX)60.16%
  316IATR60.11%
  317MARS (Multi-Atlas Robust Segmentation)59.98%
  318SPHARM-PDM Toolbox59.79%
  319Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  320Human Imaging Database (HID)59.62%
  321Neoseg59.61%
  322GRETNA59.59%
  323iso2mesh59.41%
  324Functional Connectivity Community59.20%
  325BRAINSSurfaceStats59.18%
  326Progression Score Model Toolkit59.14%
  327TAPIR58.98%
  328Statistical Methods for Manifold-valued Data58.97%
  329NIRAL Utilities58.71%
  330Scalable Brain Atlas58.15%
  331Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  332pyxnat57.94%
  333Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  334IBSR57.92%
  335BRAINSTracer57.82%
  336FSL57.77%
  337Anima57.29%
  338BRAINSCortex57.21%
  339BiofilmQuant57.09%
  3403DSlicerLupusLesionModule56.97%
  3412008 MICCAI MS Lesion Segmentation Challenge56.56%
  342VectorValuedHistogramNormalizer55.65%
  343BraTumIA (Brain Tumor Image Analysis)55.62%
  344AutoTract55.51%
  345Emory-UNC Developmental Macaque Structural and DTI Atlases55.44%
  346ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis55.43%
  347Spinal Cord Toolbox55.13%
  348International Imaging Genetics Conference54.88%
  349Subject Order-Independent Group ICA54.69%
  350Draw3D and Meshinator54.46%
  351DTIProcess ToolKit54.23%
  352TumorSim53.94%
  353Center for Functional Neuroimaging Tech53.69%
  354VMTK in 3D Slicer53.66%
  355NITRC Enhanced Services53.57%
  356NIfTI53.36%
  357MCIC- schizophrenic and matched control data53.00%
  358Group ICA Toolbox (GIFT and EEGIFT)52.96%
  3593d Brain Atlas Reconstructor52.90%
  360C-PAC52.73%
  361ANTsR52.31%
  362Licensing52.22%
  363STAMP Atlases for Brain Abnormality Detection52.19%
  364Generation R Pediatric MRI Resources52.13%
  365SpineSegmentation module for 3DSlicer51.99%
  366Artifact Detection Tools (ART)51.85%
  367LONI Pipeline Environment51.77%
  368BrainVoyager Brain Tutor51.60%
  369MRI Defacer51.50%
  370Parallel Stochastic Ion Channel Simulator51.43%
  371BRAINSMush50.66%
  372Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations50.58%
  373factory_t1_dti50.47%
  374Lightweight Data Pipeline50.41%
  375CBS High-Res Brain Processing Tools50.23%
  376CANDI Neuroimaging Access Point50.01%
  377shapeAnalysisMANCOVA - SPHARM tools49.87%
  378Pipeline system for Octave and Matlab49.60%
  379Diffusional Kurtosis Estimator49.55%
  380ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  381NYU CSC TestRetest49.50%
  382ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  383Single-subject Resting state fMRI Reproducibility Resource49.46%
  384MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  385Maps4Mipav (Exploratory JIST) 49.02%
  386Multiple Correlation Function Tool48.96%
  387Waxholm Space Atlas of the C57BL/6J Mouse Brain48.88%
  388ABSORB for groupwise registration48.84%
  389Epsilon Radial Networks48.81%
  390Simple Medical Imaging Library Interface (SMILI)48.78%
  391Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  392GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  393SIVIC48.42%
  394Conferences, Workshops and Meetings48.24%
  395SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation48.03%
  396EEG human categorization data48.01%
  397BXH/XCEDE Tools47.92%
  398Orientation Distribution Function in Constant Solid Angle (CSA-ODF)47.79%
  399ANIMA47.79%
  400FBIRN Image Processing Scripts (FIPS)47.72%
  401Infant Functional Atlas47.68%
  402GenGen47.52%
  403SegEditing47.50%
  404BRAINSFit47.32%
  405fNIRS Research Database47.26%
  406The Cancer Imaging Archive (TCIA)47.14%
  407HistoloZee - 3D histology reconstruction and co-registration with MRI47.07%
  408CutNII - Custom-angle slicer for brain atlas volumes46.98%
  409NODDI Matlab Toolbox46.63%
  410MRI Dataset for Hippocampus Segmentation46.59%
  411Local Manifold Learning for Multi-atlas segmentation46.38%
  412Task Independent Fluctuations Discussion46.32%
  413BrainSuite46.10%
  414PESTICA & SLOMOCO: physio and motion correction tools46.04%
  415Graph Theory GLM (GTG) MATLAB Toolbox45.95%
  416HFH_DTI_TLE_TOOLS45.95%
  417Wisconsin White Matter Hyperintensities Segmentation Toolbox45.64%
  418Diffusion MRI @ DKFZ Heidelberg45.52%
  419DWI/DTI Quality Control Tool: DTIPrep45.43%
  420Phoneme-Syllable Tsinghua University CS&T 201145.43%
  421FreeSurfer45.16%
  422BetA-Series COrrelation45.03%
  423Vervet Probabilistic Atlas44.95%
  424Best Practices for Software Development44.91%
  425Spanish Resting State Network44.84%
  426S-rep Fitting, Statistics, and Segmentation44.84%
  427MATLAB Tutorial on Diffusion Tensor MRI44.47%
  428NeuroImage Field-of-View Normalization Tool44.45%
  429Bayesian Connectivity Analysis software (BCA)44.44%
  430Optseq - fMRI Event Scheduler44.39%
  431Imeka Tractography Service44.35%
  432Standard Amygdalar fMRI Probe Tasks44.32%
  433AHEAD44.13%
  434age-ility43.80%
  435EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  436In vivo MEMRI-based Mouse Brain Atlas43.68%
  437Preprocessed Connectomes Project43.46%
  438QCQP43.44%
  439Human Connectome Project (HCP)43.41%
  440Multicomponent T2 estimation with stimulated echo correction43.38%
  441SRI24 Atlas: Normal Adult Brain Anatomy43.31%
  442Brainnetome fMRI toolkit43.27%
  443Robust Brain Extraction (ROBEX)43.23%
  444Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.07%
  445Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  446NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space42.90%
  447Brainnetome DiffusionKit42.75%
  448ABC (Atlas Based Classification)42.57%
  449BRAINSROIAuto42.50%
  450Graphtools42.47%
  451Longitudinal MS Lesion Imaging Archive42.35%
  452NIDB - Neuroinformatics Database42.27%
  453FMRIpower42.01%
  454ShapeComplexityIndex41.87%
  455GIMME (Group Iterative Multiple Model Estimation)41.79%
  456Deformable Template Model for Brain Analysis41.73%
  457HAMMER: Deformable Registration41.51%
  458YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  459Brainance DTI Module41.33%
  460Brain Connectivity Toolbox41.17%
  461Cluster reporter41.03%
  462Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  463Neurolucida40.86%
  464iBEAT40.72%
  465CBFBIRN40.45%
  466Stereo Investigator40.09%
  4677T Structural MRI scans ATAG39.99%
  468REX39.98%
  469Atlasing of the basal ganglia39.94%
  470SPM39.76%
  471Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.24%
  472DTI-TEMPLATE-RHESUS-MACAQUES39.17%
  473Fast Nonlocal Means for MRI denoising39.14%
  474DTI Atlas Builder39.04%
  475Quantitative Diffusion Tools39.01%
  476DeID - A data sharing tool for neuroimaging studies38.90%
  477ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  478XNAT38.79%
  479FiberViewerLight38.56%
  480Functional Analysis of Diffusion Tensor38.56%
  481Gibbsconnectome38.30%
  482GLIRT38.22%
  483VAMCA Cortical Meta-analysis Toolbox37.53%
  484DICOMConvert37.27%
  485BrainCSI37.02%
  486LONI Debabeler36.97%
  487Task-based fMRI atlases36.90%
  488JIST Resources for Algorithm Development36.69%
  489DTI-Reg36.47%
  490JIP fMRI Analysis Toolkit35.79%
  491MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.67%
  492AutoSeg35.63%
  493masked ICA (mICA) Toolbox35.56%
  494MriWatcher35.48%
  495CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.35.32%
  496AMILab35.01%
  497RapidArt34.88%
  498isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab34.43%
  499GTRACT34.29%
  500BrainSolution34.27%
  501MABMIS: Multi-Atlas Based Segmentation34.06%
  502Stark Cross-Sectional Aging33.88%
  503cPPI Toolbox for fMRI33.81%
  504SkullStrippingToolkit33.69%
  505Cerebellar White Matter Atlas33.68%
  506Multi-fiber Reconstruction from DW-MRI33.28%
  507Templates for In vivo Mouse Brain33.23%
  508Brainscape33.14%
  509PyMVPA33.13%
  510DRAMMS Deformable Image Registration Toolbox32.82%
  511MRI Studio32.82%
  512peak_nii32.69%
  513Functional Connectivity Analysis Tool for near-infrared spectroscopy data32.64%
  514DTI denoising32.30%
  515Diffusion Tractography with Kalman Filter32.01%
  516CIFTI Connectivity File Format31.87%
  517MRIcroS31.72%
  518PHYCAA+: adaptive physiological noise correction for BOLD fMRI31.69%
  519ShapeWorks31.68%
  520fMRI Grocer31.59%
  521Computational Anatomy Toolbox - CAT31.38%
  522Slicer3 Example Modules31.32%
  523High-quality diffusion-weighted imaging of Parkinson's disease30.87%
  524GIMIAS30.79%
  525DicomBrowser30.75%
  526HAMMER Suite30.67%
  5273-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood30.60%
  528Image Synthesis30.50%
  529Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.36%
  530ADJUST - EEG Automatic Artifact Removal29.98%
  531BASH4RfMRI29.93%
  532Program for optimal design of blocked fMRI experiments29.84%
  533Group Information Guided ICA29.84%
  534MIPAV29.74%
  535GAMBIT29.74%
  536Manually Labeled MRI Brain Scan Database29.58%
  537NPTK29.57%
  538Corpus Callosum Thickness Profile Analysis Pipeline29.55%
  539NIH Pediatric MRI Data Repository29.38%
  540NITRC GForge Extensions29.35%
  541ShapePopulationViewer29.34%
  542DFBIdb29.33%
  543SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  544BRAINSDemonWarp29.19%
  545Paradigm29.09%
  5463DMeshMetric28.93%
  547HI-SPEED Software Packets28.78%
  548Numerical Fibre Generator (NFG)28.44%
  549ASHS: Automatic Segmentation of Hippocampal Subfields28.30%
  550Brainnetome Atlas Viewer28.18%
  551Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  552R-package for adaptive DWI analysis27.98%
  553Hierarchical Functional Networks in Resting State fMRI27.94%
  554Simulated Diffusion-Weighted Datasets27.93%
  555Colin 3T/7T High-resolution Atlas27.85%
  556UNC Human Brain Atlas27.82%
  557NIH-CIDI Lung Segmentation Tool27.60%
  558A label fusion using CRF27.43%
  559Template Image Processing Library27.41%
  560AtlasConstructionToolkit27.38%
  561DTI Fiber Tract Statistics27.37%
  562DW-MRI registration in FSL27.31%
  563MR Connectome Automated Pipeline (MRCAP)27.19%
  564C8: Corpus Callosum Computations27.10%
  565Clinical Toolbox for SPM26.98%
  566ProCTSeg26.94%
  567MisterI26.85%
  568SPHARM-MAT26.79%
  569Elastic Net-based Parcellation (ENPA)26.77%
  570ARCTIC26.54%
  571MeshValmet: Validation Metric for Meshes26.25%
  572eConnectome26.12%
  573BrainVoyager Viewer26.01%
  574BrainParser25.81%
  575Robust Biological Parametric Mapping25.78%
  576Gradient Non-linearity Unwarping Tool25.47%
  577volBrain: online MRI segmentation25.39%
  578MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation25.36%
  579Convert MNI coordinates to or from XYZ25.35%
  580MASI Label Fusion25.14%
  581CleanLine24.99%
  582FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.94%
  583WFU_Pipeline24.93%
  584Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)24.93%
  585GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.82%
  586MIView24.57%
  587LORIS24.52%
  5883T MRI data set on structural brain-behavior correlations24.45%
  589Automatic Segmentation Tool Adapter24.17%
  590TetraMetrix24.14%
  591Spatial Statistical Parametric Mapping24.11%
  592Finsler tractography module for Slicer24.11%
  593A joint sparse partial correlation method for estimating group functional networks24.10%
  594WFU_BPM23.87%
  595R-package for adaptive fMRI analysis23.82%
  596CCSeg - Corpus Callosum Segmentation23.72%
  597SnPM23.58%
  598MNE - Minimum Norm Current Estimates23.36%
  599minc-toolkit23.30%
  600B0 and eddy current correction for DTI23.28%
  601Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising23.28%
  602Functional Regression Analysis of DTI23.20%
  603Morphometry BIRN23.14%
  604aBEAT23.10%
  605RFT_FDR22.92%
  606OASIS22.74%
  607Web Game for Collaborative Labeling22.64%
  608DOTS WM tract segmentation22.42%
  609VoxBo22.41%
  610Notion ResearchPACS22.30%
  611Camino22.25%
  612Inter-Group Registration Toolbox22.21%
  613JHU Proj. in Applied Medical Imaging22.20%
  614Corpus callosum and brain segmentations from ABIDE database22.08%
  615xjView, a viewing tool for SPM22.04%
  616POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  617MOCA21.91%
  618Iterative dual-regression with sparse prior21.85%
  619Estimating Functional Brain Network based on Modularity Prior21.77%
  620BTK : Baby Brain Toolkit21.77%
  621LONI Inspector21.75%
  622Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.58%
  623Slicer3 Module Rician noise filter21.57%
  6244D Atlas Construction21.57%
  625Diffusion MRI - In-vivo and Phantom Data21.52%
  626PICSL Multi-Atlas Segmentation Tool21.43%
  627Mindboggle: automated brain labeling21.10%
  628SOCK20.87%
  629MGH Neonatal/Pediatric ADC atlases20.86%
  630Brainstorm20.83%
  631cortex20.81%
  632Single-index Varying Coefficient Model for Functional Responses20.79%
  633freesurfR20.70%
  634Displacement Field Viewer20.24%
  635STAPLE20.19%
  636DentalTools20.18%
  637AURA tools : AUtomated Retinal Analysis tools20.10%
  638NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering20.05%
  639Generalized Covariance Analysis (gCVA)20.01%
  640GAMMA19.88%
  641NiiStat19.78%
  642Efficient Permutation Testing19.76%
  643imcalc: SPM batch image calulator19.43%
  644UManitoba-JHU Functionally-Defined Human White Matter Atlas19.18%
  645INIA19 Primate Brain Atlas19.15%
  646Fusion ICA Toolbox (FIT)19.13%
  647DW-MRI Random Walk Simulator19.05%
  648BrainNetworkConstructionAnalysisPlatform19.02%
  649Connectome Workbench19.01%
  650NIRx2nirs: A NIRx to .nirs data converter18.96%
  651ALVIN - Lateral Ventricle Segmentation18.88%
  652Randomized Denoising Autoencoders for Neuroimaging18.77%
  653FIV18.74%
  654Diffusion MRI Tool18.59%
  655Parallel Graph-theoretical Analysis Toolkit18.57%
  656Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.51%
  657Landman NeuroImaging Tools18.33%
  658Resource Ontology Discussion Group18.26%
  659Penn Hippocampus Atlas18.24%
  660SPM_SS - fMRI functional localizers18.00%
  661Hitachi2nirs17.93%
  662CMFreg17.84%
  663XFSL: An FSL toolbox17.71%
  664MouseBIRN Atlasing Toolkit (MBAT)17.55%
  665Brain lesion segmentation tool using SVM17.44%
  666SINOMO (SIngular NOde MOtifs)17.29%
  667NVM17.27%
  668BCILAB17.04%
  669fMRI Classification in R16.99%
  670Serotonin Transporter HighResolution PET Template16.95%
  671Automated Image Registration (AIR)16.63%
  672resting-state pediatric imaging template16.48%
  673MIAS Registration Toolkit16.33%
  674ValMap: simple statistical mapping tool16.16%
  675Wavelet-based Image Fusion16.15%
  676Brain Segmentation Testing Protocol16.15%
  677Using Make for Neuroimaging Workflow: Manual and Examples15.96%
  678vis: SPM Visualized Statistics toolbox15.94%
  679DICCCOL predictor (v0.1)15.77%
  680CoCoMac-Paxinos3D viewer15.74%
  681Jim15.69%
  682Segmentation Validation Engine15.51%
  683IDeA Lab brain image processing suite15.37%
  684MGDM: Multi Geometric Deformable Model15.32%
  685NIRS-SPM15.28%
  686TractoR: Tractography with R15.26%
  687Internet Brain Volume Database (IBVD)15.26%
  688DIAMOND15.06%
  689The Brain Coactivation Map15.02%
  690VarTbx – Variability Toolbox14.98%
  691NeuroLens14.85%
  692MRI Neuroanatomy Labeling Services14.67%
  693CamBA14.66%
  694Brainwaver14.54%
  695Subject Library14.45%
  696Level-set Segmentation for Slicer314.41%
  697Measure Projection Toolbox (MPT)14.34%
  698Cluster Extent Correction14.29%
  699LONI De-identification Debablet14.21%
  700Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  701Microstructural correlation toolbox13.71%
  702Kymata Atlas13.66%
  703NeuroPub Visualizer13.65%
  704BrainDecoderToolbox13.51%
  705mach2dat13.49%
  706BrainFX13.48%
  707mach2qtl13.41%
  708Pythagorean Displacement and Motion Regressors13.36%
  709COMPARE13.36%
  710Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.28%
  711gCCA12.94%
  712N3 - MINC B0 nonuniformity correction12.85%
  713BrainVision Analyzer12.81%
  714SVV12.58%
  715Brainvox12.36%
  716MouseTracker12.28%
  717M312.26%
  718fanDTasia Java Applet: DT-MRI Processing11.91%
  719MEG Tools11.89%
  720MaCH11.24%
  721UNC Primate Brain Atlas11.21%
  722INCF11.07%
  723Caret11.06%
  724CDF-HC PointSetReg10.39%
  725MaCH-Admix10.29%
  726Rodent Brain Extraction Tool10.17%
  727ShapeComplexAtlas10.08%
  728Distributome9.292%