Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC Stage. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC Stage.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1NITRC Image Repository99.21%
  2MRIcron97.47%
  3BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  41000 Functional Connectomes Project93.53%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6ITK-SNAP93.46%
  7MRIcroGL91.70%
  8Rosetta Bit90.88%
  9Functional Mixed Processes Models89.05%
  10MPScope88.22%
  11Multi-Modal MRI Reproducibility Resource88.21%
  12TOADS-CRUISE Brain Segmentation Tools86.83%
  13DTI-TK86.72%
  14BrainNet Viewer85.88%
  15Hadoop for data colocation85.39%
  16JIST: Java Image Science Toolkit85.19%
  17Kurtosis Imaging Network - KIN84.52%
  18BRAINSTestData84.43%
  19CONN : functional connectivity toolbox84.31%
  20ITools Resourceome84.16%
  21PANDA: a pipeline tool for diffusion MRI83.94%
  22Local Label Learning (LLL) Segmentation83.13%
  23HD Neuro-Informatics83.02%
  24Functional Imaging BIRN82.41%
  25Infant Macaque MRI And DTI Templates82.26%
  26Lumina LP- 400 Response System82.21%
  27Philips Users Community82.17%
  28fMRI Results Comparison Library82.15%
  29Statistical Methods for Heterogeneous Neuroimaging Data81.82%
  30HERMES81.06%
  31NUTMEG80.78%
  32ODIN80.52%
  33Stochastic Tractography System80.43%
  34Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  35fMRIstat79.79%
  36map3d79.67%
  37Turbo-BrainVoyager79.64%
  38University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  39Solar Eclipse Imaging Genetics tools78.84%
  40EEGLAB78.77%
  41Seg3D78.68%
  42Ogles - OpenGL/OIV Stereotactic Tool78.64%
  43UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  44Umeå Brain Arteries78.64%
  45iView X MRI-LR - Eye Tracking for fMRI78.64%
  46MITK Diffusion78.63%
  47L-Neuron78.49%
  48Vaa3D and Vaa3D-Neuron78.42%
  49NeuroDebian78.39%
  50XCEDE Schema78.35%
  51BioSig78.08%
  52Curry 777.81%
  53GazeReader77.81%
  54Functional ROI Atlas77.78%
  55BluePyOpt77.70%
  56SurfStat77.60%
  57CBRAIN77.49%
  58GPU based affine registration77.46%
  59FieldTrip77.34%
  60Biomag Discussion Group on Yahoo77.32%
  61XNBC77.14%
  62DSI Studio77.02%
  63Brede Toolbox77.01%
  64WFU_PickAtlas77.00%
  65EEG Toolbox76.93%
  66HCP Harvard/MGH-UCLA76.85%
  67EEProbe76.84%
  68MASIMatlab76.81%
  69epi-example-dicom76.63%
  70E-Prime Extensions for fMRI76.62%
  71National Database for Autism Research76.52%
  72TurtleSeg76.48%
  73MindSeer76.42%
  74COINS76.26%
  75EONS76.25%
  76Insight Toolkit76.17%
  77Spatial Analysis 3D76.15%
  78ASA - Advanced Source Analysis76.11%
  79NIPY Diffusion Imaging Analysis76.10%
  80Brain Products' EEG/fMRI Hardware76.05%
  81PING75.85%
  82Cytoseg75.83%
  83HCP WU-Minn Consortium75.77%
  84cvstest75.73%
  85In vivo MEMRI-based Rat Brain Atlas75.71%
  86NICE-SIGN75.68%
  87MNI Macaque Atlases75.65%
  88GesTr75.60%
  89cmrep75.59%
  90ParaView75.52%
  91Surf Ice75.48%
  92PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  93Framework for Open Programmatic Access75.38%
  94LIBEEP75.38%
  95NIPY File IO75.18%
  96Micro-Manager75.17%
  97A robust method for correcting partial volume effect in ASL data75.12%
  983T DWI test-retest reliability dataset75.10%
  99GIFTI75.05%
  100NFT: Neuroelectromag Forward Modeling75.04%
  101Brainsight74.90%
  102Faceted Search Based Ontology Visualizer74.89%
  103INCF Neuroimaging Data Sharing74.89%
  104Net Station74.81%
  105UCLA Multimodal Connectivity Database74.77%
  106FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  107brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  108EEGVIS74.66%
  109ProbabilisticBiasCorrection74.60%
  110I/OWA 374.57%
  111dtiBrainScope74.54%
  112DICOM_UploadGUI74.52%
  113Connectome File Format (CFF)74.48%
  114APERTURE74.44%
  115mask_explorer74.44%
  116Bisque74.41%
  117BrainLiner.jp74.34%
  118Advanced Normalization Tools74.32%
  119nitime74.27%
  120INVIZIAN74.26%
  121Anatomist74.21%
  122NordicNeuroLab74.14%
  123XCEDE Schema74.09%
  124Presentation74.05%
  125connectir74.03%
  126NC-IGT Fast Imaging Library74.00%
  127Age Related Atrophy Dataset74.00%
  128ERPLAB73.92%
  129VIEWPixx73.91%
  130CANDI Share: Schizophrenia Bulletin 200873.91%
  131Triangle BioSystems73.89%
  132BrainMaps.org73.86%
  133Pydicom73.82%
  134The fMRI Data Center73.82%
  135PySurfer73.76%
  136Statistics Online Computational Resource73.45%
  137TARQUIN MRS analysis package73.40%
  138NIRx NIRS Neuroimaging73.39%
  139PyNIfTI73.36%
  140Neuroimaging Made Easy Blog73.33%
  141COGNISION (TM) System73.25%
  142NITRC Community73.24%
  143OpenElectrophy73.22%
  144NIPY Community73.20%
  145XNAT Extras73.04%
  146MINC - Medical Image NetCDF73.02%
  147NeuroScope72.95%
  148ASL data processing tool box72.94%
  149MagPro Magnetic Stimulator (TMS)72.94%
  150Lipsia72.87%
  151MedINRIA72.87%
  152Mouse Connectome Project (MCP)72.79%
  153Fiber Tracking Tool72.78%
  154Fiber-tracking based on Finsler distance72.78%
  155SumsDB Database72.73%
  156Fiber Optic Button Response System72.72%
  157CUDA accelerated spherical model M/EEG72.66%
  158False Discovery Rate Weighted72.64%
  159DATAPixx72.63%
  160OpenFMRI72.62%
  161DONE: Detection of Outlier NEurons72.55%
  162ArtRepair for robust fMRI72.45%
  163WhiteText - annotated neuroscience text72.44%
  164fMRI-CPCA72.37%
  165NIPY Structural and Functional Analysis72.36%
  166MONSTR Multi Contrast Brain Stripping72.30%
  167CLEAVE: Large Data Set ANOVA72.21%
  168scikit-learn72.17%
  169Mag Design and Engineering72.10%
  170Working Memory Trainer72.06%
  171PPMI72.00%
  172SFMProject71.92%
  173vuTools71.88%
  174Hitachi Optical Topography System71.88%
  175BRAINSConstellationDetector71.85%
  176Generalized PPI Toolbox71.74%
  177Computational Morphometry Toolkit (CMTK)71.61%
  178MRI Digital Projection System71.59%
  179ShapeViewer71.52%
  180Normative Independent Component Analysis71.48%
  181LDDMM71.43%
  182fNIR Devices71.38%
  183OpenMEEG71.38%
  184TORTOISE71.25%
  185NeuroElf71.23%
  186ADNI71.16%
  1874D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  188COST71.02%
  189GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.85%
  190NeuroSynth70.83%
  191Viking Viewer for Connectomics70.74%
  192Network-Based Statistic (NBS)70.72%
  193SR Research EyeLink Eye Trackers70.67%
  194LONI Provenance Editor70.63%
  195CoCoMac Brain Connectivity Database70.62%
  196MazeSuite70.54%
  197NCANDA: Data Integration Component70.52%
  198BrainBrowser70.49%
  199Pipeline Neuroimaging VirtualEnvironment70.41%
  200Biomedical Informatics Research Network70.34%
  201Disease State Prediction70.12%
  202Open Connectome Project70.04%
  203REST: a toolkit for resting-state fMRI69.97%
  204OEI fMRI compatible olfactometer69.96%
  205Journals69.76%
  206Fast Fourier Transform (FFT) JavaLibrary69.75%
  207Laboratory of Neuro Imaging (LONI)69.74%
  208dcm2nii69.74%
  209IMOD - 3D Reconstruction and Analysis69.72%
  210Mouse BIRN69.44%
  211BrainGraph Editor 1.0 Beta69.44%
  212Waxholm Space Atlas of the Sprague Dawley Rat Brain69.42%
  213Source Information Flow Toolbox69.38%
  214LIMO EEG69.17%
  215Center for Computational Biology (CCB)69.15%
  216FADTTSter68.99%
  217Synchronized Histological Image View Arc68.86%
  218cbiNifti: Matlab/Octave Nifti library68.82%
  219BrainMap Database68.82%
  220Analyze68.78%
  221DPARSF68.68%
  222Textpresso - literature search engine68.67%
  223BioImage Suite68.66%
  224NeuroshareLibrary68.65%
  225E-Prime 3.068.58%
  226PST MRI Simulator68.50%
  227Augmented Reality Mirror68.28%
  228BrainVisa Morphologist extensions68.23%
  229PsychoPy68.14%
  230CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  231Grantees Meeting for NITRC68.08%
  232Create DWI Atlas67.98%
  233The Neuro Bureau67.72%
  234BrainMagix SPM Viewer67.70%
  235BioMesh3D67.70%
  236Data Format Tools67.66%
  237NeuroWeb - NeuroImaging Database67.63%
  238NeuriteTracer67.45%
  239MultiTracer version 267.40%
  240dinifti67.32%
  241Rodent Cortical Thickness Analysis67.26%
  242Low Resolution Brain Electromagnetic Tomography67.25%
  243N2A67.19%
  244MeshGen - Surface meshes from volumetric segmentation data67.11%
  245Brede Wiki67.00%
  246SCIRun66.94%
  247Rockland Download Link Script66.78%
  248MEGSIM66.69%
  249Nilearn66.56%
  250VANDPIRE66.50%
  251NIPY Pipeline and Interfaces66.47%
  252CAMINO-TRACKVIS66.47%
  253HDBIG66.40%
  254BrainVISA66.29%
  255cvstest266.23%
  256SLIC: a whole brain parcellation toolbox66.20%
  257ImageVis3D66.18%
  258Multiscale Weighted Principal Component Regression66.06%
  259Homer266.00%
  260BrainMask Volume Processing Tool65.98%
  261Books65.58%
  262Group Level Imputation of Statistic Maps65.49%
  263Connectome Viewer65.38%
  264SCRalyze65.38%
  265ShapeTools65.31%
  266HFH_DTI_DATA65.15%
  267MRBrainS Evaluation Framework / Challenge65.15%
  268PICASSO skull stripping tool65.14%
  269CBICA: Cancer and Phenomics Toolkit (CapTk)65.11%
  270ExPosition Packages65.09%
  271MRI_CVPR65.08%
  272Signed Differential Mapping65.05%
  273IIT Human Brain Atlas (v.4.1)65.01%
  274NIREP64.96%
  275Parkinson's Disease Discovery Database64.60%
  2763D Slicer64.41%
  277Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  278Diffusion Warp64.08%
  279UNC-Wisconsin Neurodevelopment Rhesus MRI Database63.93%
  280Mango63.81%
  281Non-rigid groupwise registration method63.75%
  282MRtrix63.60%
  283Web Interfaces for Multiscale Images63.57%
  284MarsBaR region of interest toolbox63.54%
  285Hammer And WML Modules for 3D Slicer63.32%
  286Temporal-lobe.com63.32%
  287NeoSegPipeline63.20%
  288UNC 0-1-2 Infant Atlases63.15%
  289Brain Entropy in space and time (BEst)63.14%
  290FSL extensions63.14%
  291POS2SPM63.12%
  292Medical Image Visualization and Analysis63.06%
  293AFNI63.05%
  294CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  295ENIGMA-DTI pipeline62.94%
  296Spatially Constrained Parcellation62.81%
  297Talairach Daemon62.69%
  298Neuroimaging Data Access Group62.68%
  299Diffusion Toolkit / TrackVis62.66%
  300The Cognitive Atlas62.43%
  301Tractography based on Riemannian geodesics and tensor adjugates62.21%
  302Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  303NeuroImaging Analysis Kit (NIAK)61.88%
  304Mindboggle-101 manually labeled brains61.81%
  305fNIRS Data Analysis Environment61.69%
  306Monte Carlo Simulation Software: tMCimg61.67%
  307Neural ElectroMagnetic Ontologies61.65%
  308PubBrain Database61.64%
  309MoTrak - Head Motion Tracking System61.63%
  310Automatic Registration Toolbox61.15%
  311CIGAL61.11%
  312SPM for fNIRS toolbox61.04%
  313Mesh-based Monte Carlo (MMC)60.92%
  314MRI denoising60.63%
  315BrainVoyager60.48%
  316Neuroinformatics - The Journal60.36%
  317Monte Carlo eXtreme (MCX)60.16%
  318IATR60.11%
  319SPHARM-PDM Toolbox59.79%
  320Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  321Human Imaging Database (HID)59.62%
  322Neoseg59.61%
  323GRETNA59.59%
  324iso2mesh59.41%
  325Functional Connectivity Community59.20%
  326BRAINSSurfaceStats59.18%
  327Progression Score Model Toolkit59.14%
  328TAPIR58.98%
  329Statistical Methods for Manifold-valued Data58.97%
  330NIRAL Utilities58.71%
  331MARS (Multi-Atlas Robust Segmentation)58.54%
  332Scalable Brain Atlas58.15%
  333Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  334FSL57.96%
  335pyxnat57.94%
  336Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  337IBSR57.92%
  338BRAINSTracer57.82%
  339Anima57.29%
  340BRAINSCortex57.21%
  341BiofilmQuant57.09%
  3423DSlicerLupusLesionModule56.97%
  3432008 MICCAI MS Lesion Segmentation Challenge56.56%
  344VectorValuedHistogramNormalizer55.65%
  345BraTumIA (Brain Tumor Image Analysis)55.62%
  346AutoTract55.51%
  347Emory-UNC Developmental Macaque Structural and DTI Atlases55.44%
  348ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis55.43%
  349Spinal Cord Toolbox55.13%
  350International Imaging Genetics Conference54.88%
  351Subject Order-Independent Group ICA54.69%
  352Draw3D and Meshinator54.46%
  353DTIProcess ToolKit54.23%
  354TumorSim54.20%
  355Center for Functional Neuroimaging Tech53.73%
  356VMTK in 3D Slicer53.66%
  357NIfTI53.36%
  358NITRC Enhanced Services53.10%
  359MCIC- schizophrenic and matched control data53.00%
  3603d Brain Atlas Reconstructor52.90%
  361C-PAC52.73%
  362Group ICA Toolbox (GIFT and EEGIFT)52.41%
  363ANTsR52.31%
  364STAMP Atlases for Brain Abnormality Detection52.19%
  365Generation R Pediatric MRI Resources52.13%
  366SpineSegmentation module for 3DSlicer51.99%
  367Artifact Detection Tools (ART)51.85%
  368LONI Pipeline Environment51.77%
  369BrainVoyager Brain Tutor51.54%
  370Parallel Stochastic Ion Channel Simulator51.43%
  371Licensing51.40%
  372MRI Defacer51.20%
  373BRAINSMush50.66%
  374Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations50.58%
  375factory_t1_dti50.47%
  376Lightweight Data Pipeline50.41%
  377Diffusional Kurtosis Estimator50.24%
  378shapeAnalysisMANCOVA - SPHARM tools49.87%
  379CBS High-Res Brain Processing Tools49.75%
  380CANDI Neuroimaging Access Point49.62%
  381Pipeline system for Octave and Matlab49.60%
  382ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  383NYU CSC TestRetest49.50%
  384ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  385Single-subject Resting state fMRI Reproducibility Resource49.46%
  386MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  387Maps4Mipav (Exploratory JIST) 49.02%
  388Multiple Correlation Function Tool48.96%
  389Waxholm Space Atlas of the C57BL/6J Mouse Brain48.88%
  390Epsilon Radial Networks48.81%
  391Simple Medical Imaging Library Interface (SMILI)48.78%
  392Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  393GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  394SIVIC48.42%
  395ABSORB for groupwise registration48.29%
  396Conferences, Workshops and Meetings48.24%
  397SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation48.03%
  398EEG human categorization data48.01%
  399BXH/XCEDE Tools47.92%
  400Orientation Distribution Function in Constant Solid Angle (CSA-ODF)47.79%
  401ANIMA47.79%
  402FBIRN Image Processing Scripts (FIPS)47.72%
  403Infant Functional Atlas47.68%
  404GenGen47.52%
  405SegEditing47.50%
  406BRAINSFit47.32%
  407fNIRS Research Database47.26%
  408The Cancer Imaging Archive (TCIA)47.14%
  409HistoloZee - 3D histology reconstruction and co-registration with MRI47.07%
  410DWI/DTI Quality Control Tool: DTIPrep47.03%
  411NODDI Matlab Toolbox46.63%
  412MRI Dataset for Hippocampus Segmentation46.59%
  413Local Manifold Learning for Multi-atlas segmentation46.38%
  414Task Independent Fluctuations Discussion46.32%
  415PESTICA & SLOMOCO: physio and motion correction tools46.04%
  416Graph Theory GLM (GTG) MATLAB Toolbox45.95%
  417HFH_DTI_TLE_TOOLS45.95%
  418BrainSuite45.91%
  419Wisconsin White Matter Hyperintensities Segmentation Toolbox45.64%
  420Diffusion MRI @ DKFZ Heidelberg45.52%
  421Phoneme-Syllable Tsinghua University CS&T 201145.43%
  422FreeSurfer45.16%
  423BetA-Series COrrelation45.03%
  424Vervet Probabilistic Atlas44.95%
  425Best Practices for Software Development44.91%
  426Spanish Resting State Network44.84%
  427S-rep Fitting, Statistics, and Segmentation44.84%
  428MATLAB Tutorial on Diffusion Tensor MRI44.47%
  429NeuroImage Field-of-View Normalization Tool44.45%
  430Bayesian Connectivity Analysis software (BCA)44.44%
  431Optseq - fMRI Event Scheduler44.39%
  432Imeka Tractography Service44.35%
  433Standard Amygdalar fMRI Probe Tasks44.32%
  434AHEAD44.13%
  435EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  436In vivo MEMRI-based Mouse Brain Atlas43.68%
  437Preprocessed Connectomes Project43.46%
  438QCQP43.44%
  439Human Connectome Project (HCP)43.41%
  440Multicomponent T2 estimation with stimulated echo correction43.38%
  441SRI24 Atlas: Normal Adult Brain Anatomy43.31%
  442Brainnetome fMRI toolkit43.27%
  443Robust Brain Extraction (ROBEX)43.23%
  444age-ility43.08%
  445Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.07%
  446Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  447NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space42.90%
  448Brainnetome DiffusionKit42.75%
  449ABC (Atlas Based Classification)42.57%
  450BRAINSROIAuto42.50%
  451Graphtools42.47%
  452Longitudinal MS Lesion Imaging Archive42.35%
  453NIDB - Neuroinformatics Database42.27%
  454FMRIpower42.01%
  455ShapeComplexityIndex41.87%
  456GIMME (Group Iterative Multiple Model Estimation)41.79%
  457Deformable Template Model for Brain Analysis41.73%
  458HAMMER: Deformable Registration41.51%
  459YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  460Brainance DTI Module41.33%
  461Brain Connectivity Toolbox41.17%
  462Cluster reporter41.03%
  463Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  464Neurolucida40.86%
  465CutNII - Custom-angle slicer for brain atlas volumes40.74%
  466iBEAT40.72%
  467CBFBIRN40.45%
  468Stereo Investigator40.09%
  4697T Structural MRI scans ATAG39.99%
  470REX39.98%
  471Atlasing of the basal ganglia39.94%
  472SPM39.76%
  473Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.24%
  474DTI-TEMPLATE-RHESUS-MACAQUES39.17%
  475Fast Nonlocal Means for MRI denoising39.14%
  476DTI Atlas Builder39.04%
  477Quantitative Diffusion Tools39.01%
  478DeID - A data sharing tool for neuroimaging studies38.90%
  479ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  480XNAT38.79%
  481FiberViewerLight38.56%
  482Functional Analysis of Diffusion Tensor38.56%
  483Gibbsconnectome38.30%
  484GLIRT38.22%
  485VAMCA Cortical Meta-analysis Toolbox37.53%
  486DICOMConvert37.27%
  487BrainCSI37.02%
  488LONI Debabeler36.97%
  489Task-based fMRI atlases36.90%
  490JIST Resources for Algorithm Development36.69%
  491DTI-Reg36.47%
  492JIP fMRI Analysis Toolkit35.79%
  493MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.67%
  494AutoSeg35.63%
  495masked ICA (mICA) Toolbox35.56%
  496MriWatcher35.48%
  497CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.35.32%
  498AMILab35.01%
  499RapidArt34.88%
  500isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab34.43%
  501GTRACT34.29%
  502BrainSolution34.27%
  503MABMIS: Multi-Atlas Based Segmentation34.06%
  504Stark Cross-Sectional Aging33.88%
  505cPPI Toolbox for fMRI33.81%
  506SkullStrippingToolkit33.69%
  507Cerebellar White Matter Atlas33.68%
  508Multi-fiber Reconstruction from DW-MRI33.28%
  509Templates for In vivo Mouse Brain33.23%
  510Brainscape33.14%
  511PyMVPA33.13%
  512DRAMMS Deformable Image Registration Toolbox32.82%
  513MRI Studio32.82%
  514peak_nii32.69%
  515Functional Connectivity Analysis Tool for near-infrared spectroscopy data32.64%
  516DTI denoising32.30%
  517Diffusion Tractography with Kalman Filter32.01%
  518CIFTI Connectivity File Format31.87%
  519MRIcroS31.72%
  520PHYCAA+: adaptive physiological noise correction for BOLD fMRI31.69%
  521ShapeWorks31.68%
  522fMRI Grocer31.59%
  523Computational Anatomy Toolbox - CAT31.38%
  524Slicer3 Example Modules31.32%
  525High-quality diffusion-weighted imaging of Parkinson's disease30.87%
  526Corpus Callosum Thickness Profile Analysis Pipeline30.83%
  527GIMIAS30.79%
  528DicomBrowser30.75%
  529HAMMER Suite30.67%
  5303-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood30.60%
  531Image Synthesis30.50%
  532Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.36%
  533ADJUST - EEG Automatic Artifact Removal29.98%
  534BASH4RfMRI29.93%
  535Program for optimal design of blocked fMRI experiments29.84%
  536Group Information Guided ICA29.84%
  537MIPAV29.74%
  538GAMBIT29.74%
  539Manually Labeled MRI Brain Scan Database29.58%
  540NPTK29.57%
  541NIH Pediatric MRI Data Repository29.38%
  542NITRC GForge Extensions29.35%
  543ShapePopulationViewer29.34%
  544DFBIdb29.33%
  545SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  546BRAINSDemonWarp29.19%
  5473DMeshMetric28.93%
  548HI-SPEED Software Packets28.78%
  549Paradigm28.71%
  550Numerical Fibre Generator (NFG)28.44%
  551ASHS: Automatic Segmentation of Hippocampal Subfields28.30%
  552Brainnetome Atlas Viewer28.18%
  553Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  554R-package for adaptive DWI analysis27.98%
  555Hierarchical Functional Networks in Resting State fMRI27.94%
  556Simulated Diffusion-Weighted Datasets27.93%
  557Colin 3T/7T High-resolution Atlas27.85%
  558UNC Human Brain Atlas27.82%
  559NIH-CIDI Lung Segmentation Tool27.60%
  560A label fusion using CRF27.43%
  561Template Image Processing Library27.41%
  562AtlasConstructionToolkit27.38%
  563DTI Fiber Tract Statistics27.37%
  564DW-MRI registration in FSL27.31%
  565MR Connectome Automated Pipeline (MRCAP)27.19%
  566C8: Corpus Callosum Computations27.10%
  567Clinical Toolbox for SPM26.98%
  568ProCTSeg26.94%
  569MisterI26.85%
  570SPHARM-MAT26.79%
  571Elastic Net-based Parcellation (ENPA)26.77%
  572ARCTIC26.54%
  573MeshValmet: Validation Metric for Meshes26.25%
  574eConnectome26.12%
  575BrainVoyager Viewer26.01%
  576BrainParser25.81%
  577Robust Biological Parametric Mapping25.78%
  578Gradient Non-linearity Unwarping Tool25.47%
  579volBrain: online MRI segmentation25.39%
  580MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation25.36%
  581Convert MNI coordinates to or from XYZ25.35%
  582MASI Label Fusion25.14%
  583CleanLine24.99%
  584FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.94%
  585WFU_Pipeline24.93%
  586Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)24.93%
  587GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.82%
  588MIView24.57%
  589LORIS24.52%
  5903T MRI data set on structural brain-behavior correlations24.45%
  591Automatic Segmentation Tool Adapter24.17%
  592TetraMetrix24.14%
  593Spatial Statistical Parametric Mapping24.11%
  594Finsler tractography module for Slicer24.11%
  595A joint sparse partial correlation method for estimating group functional networks24.10%
  596R-package for adaptive fMRI analysis23.82%
  597WFU_BPM23.79%
  598CCSeg - Corpus Callosum Segmentation23.72%
  599SnPM23.58%
  600MNE - Minimum Norm Current Estimates23.36%
  601minc-toolkit23.30%
  602B0 and eddy current correction for DTI23.28%
  603Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising23.28%
  604Functional Regression Analysis of DTI23.20%
  605Morphometry BIRN23.14%
  606aBEAT23.10%
  607RFT_FDR22.92%
  608OASIS22.74%
  609Web Game for Collaborative Labeling22.64%
  610DOTS WM tract segmentation22.42%
  611VoxBo22.41%
  612Notion ResearchPACS22.30%
  613Camino22.25%
  614Inter-Group Registration Toolbox22.21%
  615JHU Proj. in Applied Medical Imaging22.20%
  616Corpus callosum and brain segmentations from ABIDE database22.08%
  617xjView, a viewing tool for SPM22.04%
  618POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  619MOCA21.91%
  620Iterative dual-regression with sparse prior21.85%
  621Estimating Functional Brain Network based on Modularity Prior21.77%
  622BTK : Baby Brain Toolkit21.77%
  623LONI Inspector21.75%
  624Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.58%
  625Slicer3 Module Rician noise filter21.57%
  6264D Atlas Construction21.57%
  627Diffusion MRI - In-vivo and Phantom Data21.52%
  628PICSL Multi-Atlas Segmentation Tool21.43%
  629Mindboggle: automated brain labeling21.10%
  630SOCK20.87%
  631MGH Neonatal/Pediatric ADC atlases20.86%
  632Brainstorm20.83%
  633cortex20.81%
  634Single-index Varying Coefficient Model for Functional Responses20.79%
  635freesurfR20.70%
  636Displacement Field Viewer20.24%
  637STAPLE20.19%
  638DentalTools20.18%
  639AURA tools : AUtomated Retinal Analysis tools20.10%
  640NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering20.05%
  641Generalized Covariance Analysis (gCVA)20.01%
  642GAMMA19.88%
  643NiiStat19.78%
  644Efficient Permutation Testing19.76%
  645imcalc: SPM batch image calulator19.43%
  646UManitoba-JHU Functionally-Defined Human White Matter Atlas19.18%
  647INIA19 Primate Brain Atlas19.15%
  648Fusion ICA Toolbox (FIT)19.13%
  649DW-MRI Random Walk Simulator19.05%
  650BrainNetworkConstructionAnalysisPlatform19.02%
  651Connectome Workbench19.01%
  652NIRx2nirs: A NIRx to .nirs data converter18.96%
  653ALVIN - Lateral Ventricle Segmentation18.88%
  654Randomized Denoising Autoencoders for Neuroimaging18.77%
  655FIV18.74%
  656Diffusion MRI Tool18.59%
  657Parallel Graph-theoretical Analysis Toolkit18.57%
  658Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.51%
  659Landman NeuroImaging Tools18.33%
  660Resource Ontology Discussion Group18.26%
  661Penn Hippocampus Atlas18.24%
  662SPM_SS - fMRI functional localizers18.00%
  663Hitachi2nirs17.93%
  664CMFreg17.84%
  665XFSL: An FSL toolbox17.71%
  666MouseBIRN Atlasing Toolkit (MBAT)17.55%
  667Brain lesion segmentation tool using SVM17.44%
  668SINOMO (SIngular NOde MOtifs)17.29%
  669NVM17.27%
  670BCILAB17.04%
  671fMRI Classification in R16.99%
  672Serotonin Transporter HighResolution PET Template16.95%
  673Automated Image Registration (AIR)16.63%
  674resting-state pediatric imaging template16.48%
  675MIAS Registration Toolkit16.33%
  676ValMap: simple statistical mapping tool16.16%
  677Wavelet-based Image Fusion16.15%
  678Brain Segmentation Testing Protocol16.15%
  679Using Make for Neuroimaging Workflow: Manual and Examples15.96%
  680vis: SPM Visualized Statistics toolbox15.94%
  681CoCoMac-Paxinos3D viewer15.74%
  682Jim15.69%
  683DICCCOL predictor (v0.1)15.56%
  684Segmentation Validation Engine15.51%
  685IDeA Lab brain image processing suite15.37%
  686MGDM: Multi Geometric Deformable Model15.32%
  687NIRS-SPM15.28%
  688TractoR: Tractography with R15.26%
  689Internet Brain Volume Database (IBVD)15.26%
  690DIAMOND15.06%
  691The Brain Coactivation Map15.02%
  692VarTbx – Variability Toolbox14.98%
  693NeuroLens14.85%
  694MRI Neuroanatomy Labeling Services14.67%
  695CamBA14.66%
  696Brainwaver14.54%
  697Subject Library14.45%
  698Level-set Segmentation for Slicer314.41%
  699Measure Projection Toolbox (MPT)14.34%
  700Cluster Extent Correction14.29%
  701LONI De-identification Debablet14.21%
  702Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  703Microstructural correlation toolbox13.71%
  704Kymata Atlas13.66%
  705NeuroPub Visualizer13.65%
  706BrainDecoderToolbox13.51%
  707mach2dat13.49%
  708BrainFX13.48%
  709mach2qtl13.41%
  710Pythagorean Displacement and Motion Regressors13.36%
  711COMPARE13.36%
  712Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.28%
  713gCCA12.94%
  714N3 - MINC B0 nonuniformity correction12.85%
  715BrainVision Analyzer12.81%
  716SVV12.58%
  717Brainvox12.36%
  718MouseTracker12.28%
  719M312.26%
  720fanDTasia Java Applet: DT-MRI Processing11.91%
  721MEG Tools11.89%
  722MaCH11.24%
  723UNC Primate Brain Atlas11.21%
  724INCF11.07%
  725Caret11.06%
  726CDF-HC PointSetReg10.39%
  727MaCH-Admix10.29%
  728Rodent Brain Extraction Tool10.17%
  729ShapeComplexAtlas10.08%
  730Distributome9.292%