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Below is a list of the tools and resources that have had files downloaded directly through NITRC Stage. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron474882      
  2ITK-SNAP157473      
  31000 Functional Connectomes Project101070      
  4DTI-TK70454      
  5CONN : functional connectivity toolbox43524      
  6EEGLAB38216      
  7FreeSurfer36594      
  8WFU_PickAtlas29695      
  9TOADS-CRUISE Brain Segmentation Tools27767      
  10DSI Studio27353      
  11Nilearn27203      
  12Multi-Modal MRI Reproducibility Resource24971      
  13IIT Human Brain Atlas (v.4.1)20545      
  14Functional Imaging BIRN16048      
  15BrainNet Viewer15584      
  16JIST: Java Image Science Toolkit15467      
  17PANDA: a pipeline tool for diffusion MRI14370      
  18IBSR14190      
  19The Neuro Bureau13503      
  20MRIcroGL13351      
  21Generalized PPI Toolbox12039      
  22MINC - Medical Image NetCDF10978      
  23NeuroDebian10417      
  24BrainVisa Morphologist extensions10408      
  25Solar Eclipse Imaging Genetics tools10367      
  26GIFTI10115      
  27Mango9370      
  283D Slicer9301      
  29MITK Diffusion8938      
  30MRtrix8841      
  31BrainMap Database8783      
  32Talairach Daemon8751      
  33BioImage Suite8265      
  34BrainVISA7920      
  35Automatic Registration Toolbox7744      
  36fMRI-CPCA7711      
  37Subject Order-Independent Group ICA7344      
  38Neuroimaging Made Easy Blog7130      
  39Diffusion Toolkit / TrackVis7108      
  40BrainMask Volume Processing Tool6420      
  41XNAT Extras6305      
  42Artifact Detection Tools (ART)6211      
  43fNIRS Data Analysis Environment5918      
  44FSL5722      
  453DSlicerLupusLesionModule5642      
  46Data Format Tools5605      
  47NYU CSC TestRetest5601      
  48Group ICA Toolbox (GIFT and EEGIFT)5492      
  49Hammer And WML Modules for 3D Slicer5361      
  50BrainVoyager5332      
  51Spatially Constrained Parcellation5268      
  52LONI Pipeline Environment4920      
  53Computational Morphometry Toolkit (CMTK)4912      
  54SRI24 Atlas: Normal Adult Brain Anatomy4696      
  55NeuroImaging Analysis Kit (NIAK)4544      
  56Network-Based Statistic (NBS)4478      
  57UNC 0-1-2 Infant Atlases4446      
  58BrainVoyager Brain Tutor4438      
  59Human Imaging Database (HID)4257      
  60Center for Functional Neuroimaging Tech4015      
  61Source Information Flow Toolbox3870      
  62ABSORB for groupwise registration3702      
  63SPM3655      
  64GRETNA3646      
  65MATLAB Tutorial on Diffusion Tensor MRI3469      
  66FBIRN Image Processing Scripts (FIPS)3467      
  67TumorSim3407      
  68NIfTI3402      
  69HAMMER: Deformable Registration3306      
  70MRI Defacer3204      
  71GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3198      
  72BrainSuite3171      
  73SPHARM-PDM Toolbox3166      
  74Vaa3D and Vaa3D-Neuron3128      
  75ABC (Atlas Based Classification)3114      
  76Maps4Mipav (Exploratory JIST) 3076      
  77BXH/XCEDE Tools3005      
  78Optseq - fMRI Event Scheduler2844      
  79FMRIpower2839      
  80dcm2nii2821      
  81REX2820      
  82GLIRT2815      
  832008 MICCAI MS Lesion Segmentation Challenge2810      
  84CANDI Neuroimaging Access Point2791      
  85Pipeline system for Octave and Matlab2789      
  86DWI/DTI Quality Control Tool: DTIPrep2773      
  87Task Independent Fluctuations Discussion2762      
  883T DWI test-retest reliability dataset2734      
  89LONI Debabeler2733      
  90CBS High-Res Brain Processing Tools2664      
  91MRI Studio2608      
  92age-ility2482      
  93JIP fMRI Analysis Toolkit2466      
  94Licensing2446      
  95MARS (Multi-Atlas Robust Segmentation)2417      
  96MIPAV2413      
  97iBEAT2394      
  98DicomBrowser2376      
  99XNAT2344      
  100Numerical Fibre Generator (NFG)2256