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Below is a list of the tools and resources that have had files downloaded directly through NITRC Stage. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource name Downloads
  1MRIcron474773      
  2ITK-SNAP157423      
  31000 Functional Connectomes Project101058      
  4DTI-TK70437      
  5CONN : functional connectivity toolbox43506      
  6EEGLAB38215      
  7FreeSurfer36594      
  8WFU_PickAtlas29679      
  9TOADS-CRUISE Brain Segmentation Tools27767      
  10DSI Studio27343      
  11Nilearn27184      
  12Multi-Modal MRI Reproducibility Resource24970      
  13IIT Human Brain Atlas (v.4.1)20395      
  14Functional Imaging BIRN16001      
  15BrainNet Viewer15583      
  16JIST: Java Image Science Toolkit15464      
  17PANDA: a pipeline tool for diffusion MRI14361      
  18IBSR14189      
  19The Neuro Bureau13503      
  20MRIcroGL13351      
  21Generalized PPI Toolbox12029      
  22MINC - Medical Image NetCDF10974      
  23NeuroDebian10389      
  24BrainVisa Morphologist extensions10378      
  25Solar Eclipse Imaging Genetics tools10237      
  26GIFTI10097      
  27Mango9366      
  283D Slicer9300      
  29MITK Diffusion8901      
  30MRtrix8841      
  31BrainMap Database8782      
  32Talairach Daemon8749      
  33BioImage Suite8258      
  34BrainVISA7903      
  35Automatic Registration Toolbox7744      
  36fMRI-CPCA7673      
  37Subject Order-Independent Group ICA7342      
  38Neuroimaging Made Easy Blog7130      
  39Diffusion Toolkit / TrackVis7104      
  40BrainMask Volume Processing Tool6419      
  41XNAT Extras6302      
  42Artifact Detection Tools (ART)6211      
  43fNIRS Data Analysis Environment5909      
  44FSL5714      
  453DSlicerLupusLesionModule5642      
  46NYU CSC TestRetest5600      
  47Data Format Tools5582      
  48Group ICA Toolbox (GIFT and EEGIFT)5463      
  49Hammer And WML Modules for 3D Slicer5361      
  50BrainVoyager5325      
  51Spatially Constrained Parcellation5268      
  52LONI Pipeline Environment4915      
  53Computational Morphometry Toolkit (CMTK)4912      
  54SRI24 Atlas: Normal Adult Brain Anatomy4696      
  55NeuroImaging Analysis Kit (NIAK)4528      
  56Network-Based Statistic (NBS)4477      
  57UNC 0-1-2 Infant Atlases4420      
  58BrainVoyager Brain Tutor4416      
  59Human Imaging Database (HID)4253      
  60Center for Functional Neuroimaging Tech3991      
  61Source Information Flow Toolbox3868      
  62ABSORB for groupwise registration3670      
  63SPM3650      
  64GRETNA3646      
  65MATLAB Tutorial on Diffusion Tensor MRI3466      
  66FBIRN Image Processing Scripts (FIPS)3464      
  67NIfTI3399      
  68TumorSim3381      
  69HAMMER: Deformable Registration3304      
  70GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity3198      
  71MRI Defacer3190      
  72SPHARM-PDM Toolbox3166      
  73BrainSuite3158      
  74ABC (Atlas Based Classification)3107      
  75Vaa3D and Vaa3D-Neuron3105      
  76Maps4Mipav (Exploratory JIST) 3076      
  77BXH/XCEDE Tools3005      
  78Optseq - fMRI Event Scheduler2842      
  79FMRIpower2839      
  80dcm2nii2821      
  81REX2816      
  822008 MICCAI MS Lesion Segmentation Challenge2810      
  83GLIRT2800      
  84Pipeline system for Octave and Matlab2786      
  85CANDI Neuroimaging Access Point2786      
  86Task Independent Fluctuations Discussion2761      
  87DWI/DTI Quality Control Tool: DTIPrep2755      
  88LONI Debabeler2728      
  893T DWI test-retest reliability dataset2719      
  90CBS High-Res Brain Processing Tools2658      
  91MRI Studio2603      
  92age-ility2476      
  93JIP fMRI Analysis Toolkit2466      
  94Licensing2429      
  95MIPAV2413      
  96MARS (Multi-Atlas Robust Segmentation)2401      
  97iBEAT2392      
  98DicomBrowser2376      
  99XNAT2341      
  100Numerical Fibre Generator (NFG)2256